Variant report

Variant	rs633562
Chromosome Location	chr11:84787412-84787413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10501586	0.90[ASN][1000 genomes]
rs10898359	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11234273	0.90[ASN][1000 genomes]
rs11234277	1.00[CHB][hapmap]
rs1227842	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227843	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1238728	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377302	0.95[ASN][1000 genomes]
rs1377303	0.95[ASN][1000 genomes]
rs1452928	0.90[ASN][1000 genomes]
rs1823777	0.85[AFR][1000 genomes]
rs1826613	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2453151	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2513242	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs490286	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs542892	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs543740	0.87[EUR][1000 genomes]
rs555156	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs555259	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs560214	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560587	0.87[EUR][1000 genomes]
rs567594	0.84[EUR][1000 genomes]
rs568330	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs568641	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs578782	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs582884	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs589093	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs592166	0.82[EUR][1000 genomes]
rs593800	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs594122	0.86[EUR][1000 genomes]
rs595435	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597592	0.85[EUR][1000 genomes]
rs601375	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs605652	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs617231	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs626013	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs626531	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs631370	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs632351	0.86[EUR][1000 genomes]
rs648506	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs652830	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs660274	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs666735	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs675160	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs675217	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs679745	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688329	0.85[EUR][1000 genomes]
rs689226	0.85[EUR][1000 genomes]
rs7102107	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7118119	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7948646	0.81[AFR][1000 genomes]
rs9634002	0.95[ASN][1000 genomes]
rs9634003	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9634004	0.95[ASN][1000 genomes]
rs9634018	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84787000-84788200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:84787000-84789000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84787200-84788000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:84787200-84788000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:84787200-84788200	Enhancers	NH-A	brain
6	chr11:84787200-84788400	Enhancers	Fetal Heart	heart
7	chr11:84787200-84788600	Enhancers	NHDF-Ad	bronchial
8	chr11:84787200-84789400	Enhancers	NHEK	skin
9	chr11:84787400-84787600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:84787400-84787600	Enhancers	Osteobl	bone
11	chr11:84787400-84787800	Enhancers	Right Atrium	heart
12	chr11:84787400-84788000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:84787400-84788000	Enhancers	Left Ventricle	heart
14	chr11:84787400-84788000	Enhancers	Psoas Muscle	Psoas
15	chr11:84787400-84788200	Enhancers	HSMMtube	muscle
16	chr11:84787400-84788600	Enhancers	HMEC	breast

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