Variant report

Variant	rs614689
Chromosome Location	chr11:84833837-84833838
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10501586	0.82[CHB][hapmap]
rs10898360	1.00[CHB][hapmap]
rs10898364	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1227843	0.81[CEU][hapmap]
rs1237921	0.87[CEU][hapmap]
rs1377302	0.82[CHB][hapmap]
rs1377303	0.82[CHB][hapmap]
rs1452928	0.84[ASW][hapmap];0.82[CHB][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1823777	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1826613	0.82[CHB][hapmap]
rs2453151	1.00[CHB][hapmap]
rs490286	0.82[CHB][hapmap];0.98[AFR][1000 genomes]
rs4944507	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs540153	0.90[ASN][1000 genomes]
rs542892	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap]
rs543740	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs555156	0.92[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs560214	0.82[CHB][hapmap]
rs567594	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs568641	0.81[CEU][hapmap]
rs578782	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs589093	0.82[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs592166	1.00[CHB][hapmap];0.80[YRI][hapmap];0.90[ASN][1000 genomes]
rs593800	1.00[CHB][hapmap]
rs594122	0.83[ASN][1000 genomes]
rs595435	0.82[CHB][hapmap]
rs601375	1.00[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs605652	0.85[CEU][hapmap]
rs617231	0.81[CEU][hapmap];0.80[YRI][hapmap]
rs630948	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs631370	0.80[YRI][hapmap]
rs632351	0.87[ASN][1000 genomes]
rs641958	1.00[CHB][hapmap]
rs652830	0.81[CEU][hapmap]
rs660274	1.00[CHB][hapmap]
rs666735	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs675217	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs679745	0.81[CEU][hapmap]
rs686009	0.82[CHB][hapmap]
rs7126522	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7948646	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84829600-84834800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:84829600-84843600	Weak transcription	Brain Angular Gyrus	brain
3	chr11:84830400-84838400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:84831400-84834800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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