Variant report

Variant	rs10898360
Chromosome Location	chr11:84797788-84797789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:84793270..84795600-chr11:84797702..84799867,2	MCF-7	breast:
2	chr11:84787875..84791541-chr11:84796129..84798361,4	MCF-7	breast:
3	chr11:84773038..84774022-chr11:84797656..84798368,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10501586	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs10792794	0.88[YRI][hapmap]
rs10898350	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10898359	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10898364	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11234273	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11234289	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11823251	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1227842	0.85[YRI][hapmap]
rs1238728	0.85[YRI][hapmap]
rs1377302	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1377303	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1452928	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs1823777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1826613	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2453151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2513242	0.94[ASN][1000 genomes]
rs490286	0.82[CHB][hapmap]
rs4944507	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs540153	0.81[ASN][1000 genomes]
rs542892	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[ASN][1000 genomes]
rs543740	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs555156	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs555259	0.94[YRI][hapmap]
rs560214	0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs567594	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs568330	0.97[ASN][1000 genomes]
rs589093	0.82[CHB][hapmap]
rs592166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs592622	0.88[YRI][hapmap]
rs593800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs594122	0.81[ASN][1000 genomes]
rs595435	0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs601375	0.82[CHB][hapmap]
rs605652	0.94[ASN][1000 genomes]
rs607864	1.00[JPT][hapmap];0.94[YRI][hapmap]
rs613315	0.88[YRI][hapmap]
rs614689	1.00[CHB][hapmap]
rs626013	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs626531	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs626700	0.89[YRI][hapmap]
rs630948	0.82[CHB][hapmap]
rs632351	0.85[ASN][1000 genomes]
rs641655	0.82[YRI][hapmap]
rs641958	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs660274	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs666735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs675217	0.82[CHB][hapmap]
rs679745	0.81[YRI][hapmap]
rs686009	0.82[CHB][hapmap];0.84[YRI][hapmap]
rs7102107	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7110248	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118119	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7126522	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634002	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9634003	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9634004	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9634018	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84794400-84798400	Weak transcription	Aorta	Aorta
2	chr11:84797000-84798600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84797000-84798600	Enhancers	NHDF-Ad	bronchial
4	chr11:84797200-84799400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:84797200-84799600	Enhancers	NH-A	brain
6	chr11:84797400-84798800	Enhancers	HMEC	breast
7	chr11:84797600-84798000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:84797600-84798000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:84797600-84798000	Enhancers	Osteobl	bone
10	chr11:84797600-84798200	Enhancers	A549	lung
11	chr11:84797600-84798400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:84797600-84798600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:84797600-84798600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:84797600-84799000	Enhancers	NHEK	skin
15	chr11:84797600-84800200	Enhancers	NHLF	lung

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