Variant report
| Variant | rs540153 |
|---|---|
| Chromosome Location | chr11:84825044-84825045 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10898360 | 0.81[ASN][1000 genomes] |
| rs10898364 | 0.93[ASN][1000 genomes] |
| rs1227843 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1823777 | 0.84[ASN][1000 genomes] |
| rs2453151 | 0.81[ASN][1000 genomes] |
| rs2513242 | 0.81[ASN][1000 genomes] |
| rs543740 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs555156 | 0.87[ASN][1000 genomes] |
| rs560587 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs567594 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs592166 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs593800 | 0.81[ASN][1000 genomes] |
| rs594122 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs605652 | 0.81[ASN][1000 genomes] |
| rs614689 | 0.90[ASN][1000 genomes] |
| rs617231 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs626013 | 0.81[ASN][1000 genomes] |
| rs631370 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs632351 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs635432 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs660274 | 0.81[ASN][1000 genomes] |
| rs666735 | 0.87[ASN][1000 genomes] |
| rs675160 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs675217 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7110248 | 0.81[ASN][1000 genomes] |
| rs7126522 | 0.81[ASN][1000 genomes] |
| rs7948646 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430415 | chr11:84661652-84833852 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1040393 | chr11:84708402-84866594 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv527535 | chr11:84724795-84895033 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv528491 | chr11:84724795-84895033 | Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1044370 | chr11:84748993-85293233 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:84823000-84828000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr11:84825000-84827200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
