Variant report
| Variant | rs58199198 |
|---|---|
| Chromosome Location | chr7:103082209-103082210 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr7:103082127-103082313 | HepG2 | liver: | n/a | chr7:103082241-103082256 chr7:103082239-103082253 chr7:103082238-103082254 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234715 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12164066 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57002370 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58447419 | 0.95[EUR][1000 genomes] |
| rs58909501 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59850329 | 1.00[EUR][1000 genomes] |
| rs60091747 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs60493985 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs61102415 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6970391 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73712348 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73712349 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73712381 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7779597 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
