Variant report

Variant	rs58202070
Chromosome Location	chr3:156191917-156191918
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2272113	1.00[AMR][1000 genomes]
rs59223796	1.00[AMR][1000 genomes]
rs9821636	1.00[AMR][1000 genomes]
rs9829278	1.00[AMR][1000 genomes]
rs9833563	1.00[AMR][1000 genomes]
rs9859189	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156183400-156200400	Weak transcription	HSMM	muscle
3	chr3:156187800-156200800	Weak transcription	HSMMtube	muscle
4	chr3:156189600-156192600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:156190000-156194600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:156190000-156195200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:156190000-156202400	Weak transcription	Aorta	Aorta
8	chr3:156190800-156192400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:156190800-156192600	Weak transcription	K562	blood
10	chr3:156190800-156196800	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:156191400-156192600	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:156191400-156195400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:156191400-156196800	Weak transcription	Fetal Stomach	stomach
14	chr3:156191800-156194400	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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