Variant report

Variant	rs9829278
Chromosome Location	chr3:156195816-156195817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156194846..156197692-chr3:156202889..156204599,2	MCF-7	breast:
2	chr3:156193314..156196115-chr3:156198212..156200726,2	K562	blood:
3	chr3:156194025..156195938-chr3:156197572..156200037,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2272113	1.00[AMR][1000 genomes]
rs58202070	1.00[AMR][1000 genomes]
rs59223796	1.00[AMR][1000 genomes]
rs9821636	1.00[AMR][1000 genomes]
rs9833563	1.00[AMR][1000 genomes]
rs9859189	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156183400-156200400	Weak transcription	HSMM	muscle
2	chr3:156187800-156200800	Weak transcription	HSMMtube	muscle
3	chr3:156190000-156202400	Weak transcription	Aorta	Aorta
4	chr3:156190800-156196800	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:156191400-156196800	Weak transcription	Fetal Stomach	stomach
6	chr3:156192400-156198800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:156193000-156198600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:156193200-156199400	Weak transcription	K562	blood
9	chr3:156193200-156200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:156194600-156197600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:156195000-156196400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:156195000-156196400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:156195400-156197800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr3:156195400-156200000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:156195600-156196600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr3:156195800-156196800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:156195800-156200800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:156195800-156200800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:156195800-156200800	Weak transcription	NHDF-Ad	bronchial
20	chr3:156195800-156200800	Weak transcription	Osteobl	bone
21	chr3:156195800-156201000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:156195800-156201000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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