Variant report

Variant	rs58214680
Chromosome Location	chr10:94496785-94496786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17107841	0.85[AFR][1000 genomes]
rs56372770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149117	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149118	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149121	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149128	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149129	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94496000-94497800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:94496200-94499400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94496600-94499400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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