Variant report

Variant	rs58224236
Chromosome Location	chr10:38281370-38281371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:38281220-38281370	HPAF	blood vessel:	n/a	n/a
2	SMC3	chr10:38281164-38281398	HepG2	liver:	n/a	n/a
3	RAD21	chr10:38281087-38281420	HepG2	liver:	n/a	n/a
4	CTCF	chr10:38281240-38281390	AG09319	gingival:	n/a	n/a
5	CTCF	chr10:38281094-38281438	GM12878	blood:	n/a	n/a
6	YY1	chr10:38281127-38281427	GM12878	blood:	n/a	n/a
7	CTCF	chr10:38281210-38281395	IMR90	lung:	n/a	n/a
8	CTCF	chr10:38281220-38281370	HepG2	liver:	n/a	n/a
9	CTCF	chr10:38281159-38281383	K562	blood:	n/a	n/a
10	CTCF	chr10:38281240-38281390	SK-N-SH_RA	brain:	n/a	n/a
11	RAD21	chr10:38280952-38281458	MCF-7	breast:	n/a	n/a
12	RAD21	chr10:38281069-38281463	HepG2	liver:	n/a	n/a
13	CTCF	chr10:38281086-38281451	K562	blood:	n/a	n/a
14	CTCF	chr10:38281260-38281410	RPTEC	kidney:	n/a	n/a
15	CTCF	chr10:38281220-38281370	NB4	blood:	n/a	n/a
16	RUNX3	chr10:38280936-38281391	GM12878	blood:	n/a	n/a
17	RAD21	chr10:38281083-38281392	GM12878	blood:	n/a	n/a
18	CTCF	chr10:38281220-38281370	WI-38	lung:	n/a	n/a
19	CTCF	chr10:38281169-38281392	K562	blood:	n/a	n/a
20	CTCF	chr10:38281168-38281427	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33A-1	chr10:38281255-38281395	ENSG00000226447
2	lnc-ZNF33A-1	chr10:38281255-38281394	NONHSAT012800

No data

Variant related genes	Relation type
ENSG00000206840	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56709119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56853421	0.92[AFR][1000 genomes]
rs57580433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57875019	0.92[AFR][1000 genomes]
rs58668540	1.00[AFR][1000 genomes]
rs58765099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59845482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60821205	0.92[AFR][1000 genomes]
rs61166697	1.00[AFR][1000 genomes]
rs73238294	0.85[AFR][1000 genomes]
rs73238298	0.92[AFR][1000 genomes]
rs73240115	0.92[AFR][1000 genomes]
rs73240178	0.92[AFR][1000 genomes]
rs73240193	0.92[AFR][1000 genomes]
rs73240197	0.92[AFR][1000 genomes]
rs73241911	0.89[AFR][1000 genomes]
rs73241989	0.81[AFR][1000 genomes]
rs73244300	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246329	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7905567	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv947852	chr10:38281203-38283172	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38280600-38281400	Enhancers	Dnd41	blood

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