Variant report

Variant	rs73240115
Chromosome Location	chr10:38201297-38201298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56853421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56963126	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580433	0.89[AFR][1000 genomes]
rs57875019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58224236	0.92[AFR][1000 genomes]
rs58668540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60821205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61151835	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61749010	1.00[AMR][1000 genomes]
rs7095006	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73238294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73238298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241989	1.00[AMR][1000 genomes]
rs73244300	0.89[AFR][1000 genomes]
rs73246341	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38200200-38202400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:38200200-38205200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:38200800-38205400	Weak transcription	Brain Hippocampus Middle	brain

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