Variant report

Variant	rs58234228
Chromosome Location	chr11:34845339-34845340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34804567..34805318-chr11:34844825..34845441,2	MCF-7	breast:
2	chr11:34844808..34847036-chr11:34936903..34938822,2	MCF-7	breast:
3	chr11:34840398..34841965-chr11:34845264..34846905,2	K562	blood:
4	chr11:34842739..34845478-chr11:34850745..34855445,5	K562	blood:
5	chr11:34843450..34845842-chr11:34860291..34863263,2	MCF-7	breast:
6	chr11:34842739..34845478-chr11:34850745..34852708,3	K562	blood:

Variant related genes	Relation type
ENSG00000149089	Chromatin interaction
ENSG00000110435	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16926154	1.00[ASN][1000 genomes]
rs16926156	1.00[ASN][1000 genomes]
rs60196466	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34843600-34845600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:34843600-34845600	Enhancers	Liver	Liver
4	chr11:34843800-34845800	Enhancers	Adipose Nuclei	Adipose
5	chr11:34844000-34845800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:34844400-34846200	Enhancers	HepG2	liver
7	chr11:34844400-34847800	Enhancers	Brain Angular Gyrus	brain
8	chr11:34844600-34846400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:34844800-34845400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:34844800-34845600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:34844800-34845600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:34844800-34846000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:34844800-34846600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:34844800-34847600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:34844800-34848000	Enhancers	Brain Anterior Caudate	brain
16	chr11:34844800-34848000	Enhancers	Brain Hippocampus Middle	brain
17	chr11:34844800-34848200	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:34844800-34848200	Enhancers	Brain Substantia Nigra	brain
19	chr11:34844800-34849400	Enhancers	Stomach Mucosa	stomach
20	chr11:34845000-34845800	Enhancers	Fetal Muscle Leg	muscle
21	chr11:34845000-34846200	Enhancers	Right Atrium	heart
22	chr11:34845000-34846800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:34845000-34849400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:34845200-34845600	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:34845200-34846000	Weak transcription	Esophagus	oesophagus
26	chr11:34845200-34846600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:34845200-34846600	Weak transcription	K562	blood
28	chr11:34845200-34847800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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