Variant report

Variant	rs60196466
Chromosome Location	chr11:34839904-34839905
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10047488	0.88[EUR][1000 genomes]
rs11821869	0.88[EUR][1000 genomes]
rs12291335	0.98[EUR][1000 genomes]
rs16926116	0.91[EUR][1000 genomes]
rs16926154	0.97[ASN][1000 genomes]
rs16926156	0.97[ASN][1000 genomes]
rs3920862	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55774143	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55947894	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56115421	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58234228	0.97[ASN][1000 genomes]
rs59115636	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60896094	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7124912	1.00[EUR][1000 genomes]
rs7483005	1.00[EUR][1000 genomes]
rs978167	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs60196466	APIP	cis	Esophagus Mucosa	GTEx
rs60196466	APIP	cis	lung	GTEx
rs60196466	APIP	cis	Adipose Subcutaneous	GTEx
rs60196466	APIP	cis	Esophagus Muscularis	GTEx
rs60196466	APIP	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34839400-34844000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:34839600-34840600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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