Variant report

Variant	rs978167
Chromosome Location	chr11:34857390-34857391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10047488	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11500298	0.88[AMR][1000 genomes]
rs11821869	0.88[EUR][1000 genomes]
rs12283472	0.84[AMR][1000 genomes]
rs12291335	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926116	0.91[EUR][1000 genomes]
rs16926295	0.88[AMR][1000 genomes]
rs2901525	0.88[AMR][1000 genomes]
rs3794172	0.84[AMR][1000 genomes]
rs3920862	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55774143	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947894	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115421	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59115636	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60196466	1.00[EUR][1000 genomes]
rs60896094	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7483005	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs978167	APIP	cis	Skin Sun Exposed Lower leg	GTEx
rs978167	APIP	cis	lung	GTEx
rs978167	APIP	cis	Esophagus Muscularis	GTEx
rs978167	APIP	cis	Esophagus Mucosa	GTEx
rs978167	APIP	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:34852000-34858200	Weak transcription	HepG2	liver
3	chr11:34852600-34858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34853200-34858400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:34855800-34858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:34856000-34858000	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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