Variant report

Variant	rs5824711
Chromosome Location	chr18:45396469-45396470
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1060581	chr18:45368587-45397623	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1057525	chr18:45368587-45407405	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1064282	chr18:45369857-45404768	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1063859	chr18:45372027-45404492	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1057298	chr18:45374239-45404428	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1062731	chr18:45374239-45404768	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1065607	chr18:45374658-45404751	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1059619	chr18:45384301-45401360	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1066646	chr18:45384301-45406242	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1057028	chr18:45384301-45410482	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1057181	chr18:45387616-45401360	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1063791	chr18:45387616-45404428	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1059120	chr18:45387616-45404768	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1062089	chr18:45387616-45407754	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1064124	chr18:45387616-45410760	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1059902	chr18:45387723-45401360	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1057124	chr18:45387723-45404428	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1064655	chr18:45387723-45406182	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1066562	chr18:45388621-45401360	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1067147	chr18:45388621-45404768	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv1065234	chr18:45389554-45407966	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv1057307	chr18:45394077-45404768	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv1067255	chr18:45394077-45407181	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
27	nsv1057072	chr18:45395377-45410041	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:45366600-45408200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
4	chr18:45383000-45396600	Strong transcription	Hela-S3	cervix
5	chr18:45384200-45398800	Weak transcription	Pancreas	Pancrea
6	chr18:45384200-45421200	Weak transcription	Gastric	stomach
7	chr18:45384200-45423000	Weak transcription	Lung	lung
8	chr18:45384400-45397600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr18:45384400-45397800	Weak transcription	Small Intestine	intestine
10	chr18:45384400-45400200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:45384400-45401200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr18:45384400-45410200	Weak transcription	Aorta	Aorta
13	chr18:45384400-45419600	Weak transcription	K562	blood
14	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
15	chr18:45384600-45396600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr18:45384600-45399000	Weak transcription	Right Atrium	heart
17	chr18:45384800-45396800	Weak transcription	Colon Smooth Muscle	Colon
18	chr18:45384800-45400200	Weak transcription	Brain Substantia Nigra	brain
19	chr18:45384800-45407000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
21	chr18:45385400-45396800	Weak transcription	Stomach Mucosa	stomach
22	chr18:45385400-45400000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr18:45385600-45400000	Weak transcription	Brain Hippocampus Middle	brain
24	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
25	chr18:45386400-45401800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr18:45386600-45396800	Weak transcription	NHEK	skin
27	chr18:45386600-45397400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:45386800-45397800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr18:45386800-45420400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr18:45386800-45420600	Weak transcription	Esophagus	oesophagus
31	chr18:45387000-45397000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr18:45387000-45397800	Weak transcription	Fetal Intestine Small	intestine
33	chr18:45387000-45397800	Weak transcription	Ovary	ovary
34	chr18:45387000-45407200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr18:45387000-45407200	Weak transcription	Fetal Muscle Leg	muscle
36	chr18:45387000-45408200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr18:45387000-45408400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr18:45387200-45398800	Weak transcription	Left Ventricle	heart
39	chr18:45387400-45397600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr18:45387600-45408200	Weak transcription	Fetal Stomach	stomach
41	chr18:45387800-45398200	Strong transcription	Dnd41	blood
42	chr18:45388400-45397000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr18:45388400-45398000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr18:45389000-45410200	Weak transcription	Psoas Muscle	Psoas
45	chr18:45390000-45413600	Weak transcription	Fetal Heart	heart
46	chr18:45390200-45396800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr18:45390400-45397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr18:45390400-45398200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr18:45390400-45399000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr18:45390400-45400400	Weak transcription	Brain Anterior Caudate	brain

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