Variant report

Variant	rs58251505
Chromosome Location	chr3:144094230-144094231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs41321248	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs56247328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60683417	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6440244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6762994	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781500	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6786131	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73873246	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73873255	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73873256	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73873257	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7622410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144093800-144094400	Enhancers	Fetal Lung	lung
2	chr3:144093800-144094800	Enhancers	Fetal Intestine Large	intestine
3	chr3:144093800-144094800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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