Variant report

Variant	rs73873257
Chromosome Location	chr3:144088319-144088320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144081380..144083879-chr3:144086232..144088333,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12630075	1.00[EUR][1000 genomes]
rs12632207	1.00[EUR][1000 genomes]
rs12634939	1.00[EUR][1000 genomes]
rs12636393	1.00[EUR][1000 genomes]
rs12637613	1.00[EUR][1000 genomes]
rs1503324	1.00[EUR][1000 genomes]
rs41321248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41401847	1.00[EUR][1000 genomes]
rs41430844	1.00[EUR][1000 genomes]
rs56247328	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57317338	1.00[EUR][1000 genomes]
rs57444904	1.00[EUR][1000 genomes]
rs58251505	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60683417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61146072	1.00[EUR][1000 genomes]
rs61200466	1.00[EUR][1000 genomes]
rs6440244	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762994	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781500	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6806034	0.81[AMR][1000 genomes]
rs6806051	0.81[AMR][1000 genomes]
rs72999962	1.00[EUR][1000 genomes]
rs72999980	1.00[EUR][1000 genomes]
rs72999985	1.00[EUR][1000 genomes]
rs72999988	1.00[EUR][1000 genomes]
rs72999989	1.00[EUR][1000 genomes]
rs72999991	1.00[EUR][1000 genomes]
rs73000002	1.00[EUR][1000 genomes]
rs73001805	1.00[EUR][1000 genomes]
rs73005843	1.00[EUR][1000 genomes]
rs73873246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873255	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622410	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144087600-144088800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:144087800-144088400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:144087800-144088600	Enhancers	Right Atrium	heart
4	chr3:144087800-144088800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:144088000-144088400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:144088000-144088400	Enhancers	NH-A	brain
7	chr3:144088000-144088600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:144088000-144088600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:144088200-144088600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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