Variant report

Variant	rs58256543
Chromosome Location	chr1:10664909-10664910
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10658219..10661192-chr1:10664484..10666047,2	MCF-7	breast:
2	chr1:10662635..10666770-chr1:10672476..10675391,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59859007	1.00[AFR][1000 genomes]
rs60400988	1.00[AMR][1000 genomes]
rs61736954	1.00[AMR][1000 genomes]
rs74051824	1.00[AMR][1000 genomes]
rs74052161	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10632600-10698000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:10644200-10683400	Weak transcription	K562	blood
3	chr1:10650200-10670600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:10651400-10672800	Weak transcription	Thymus	Thymus
5	chr1:10651600-10715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:10652400-10678400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:10653600-10688600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:10654800-10666200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:10654800-10691600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:10655800-10672600	Weak transcription	Right Ventricle	heart
11	chr1:10655800-10677200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:10656200-10675000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:10656400-10675000	Weak transcription	GM12878-XiMat	blood
14	chr1:10656800-10687200	Weak transcription	Small Intestine	intestine
15	chr1:10657600-10665800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:10657600-10675400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:10657600-10683200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:10657800-10666000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:10657800-10683600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr1:10657800-10684200	Weak transcription	Colonic Mucosa	Colon
21	chr1:10658000-10674600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:10658200-10694400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:10658400-10670600	Weak transcription	Left Ventricle	heart
24	chr1:10658400-10670800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:10658400-10672800	Weak transcription	Gastric	stomach
26	chr1:10658400-10674600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:10658400-10674800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:10658400-10675600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:10658400-10678200	Weak transcription	Ovary	ovary
30	chr1:10658400-10688600	Weak transcription	Fetal Lung	lung
31	chr1:10658400-10691600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:10658600-10674000	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:10658600-10675600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:10658600-10678000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:10658800-10665600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:10658800-10678400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr1:10659200-10687800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr1:10659400-10673800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:10659400-10684400	Weak transcription	Dnd41	blood
40	chr1:10659600-10665600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:10659600-10678400	Weak transcription	Placenta	Placenta
42	chr1:10659600-10683800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:10659800-10674600	Weak transcription	Brain Anterior Caudate	brain
44	chr1:10659800-10676200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:10659800-10690800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr1:10660000-10665800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr1:10660000-10665800	Weak transcription	Stomach Mucosa	stomach
48	chr1:10660000-10674800	Weak transcription	Brain Germinal Matrix	brain
49	chr1:10660000-10682000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:10660000-10683600	Weak transcription	Rectal Mucosa Donor 31	rectum

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