Variant report

Variant	rs58259941
Chromosome Location	chr19:21658289-21658290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2937169	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57705728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60467753	1.00[AMR][1000 genomes]
rs61753928	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv961284	chr19:21636687-21659271	Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21657000-21658400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr19:21657000-21658600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:21657000-21659000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr19:21657200-21658400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr19:21657200-21658400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr19:21657200-21658400	Active TSS	Brain Angular Gyrus	brain
7	chr19:21657200-21658400	Active TSS	Fetal Intestine Small	intestine
8	chr19:21657200-21658600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:21657200-21658800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr19:21657200-21658800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr19:21657200-21659000	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr19:21657200-21659200	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr19:21657400-21658400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:21657400-21658400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr19:21657400-21658400	Active TSS	Fetal Brain Female	brain
16	chr19:21657400-21659000	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr19:21657600-21658400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:21657600-21658400	Active TSS	Fetal Stomach	stomach
19	chr19:21657600-21658600	Active TSS	H1 Cell Line	embryonic stem cell
20	chr19:21657600-21658600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:21657600-21659200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:21657800-21658400	Flanking Active TSS	Fetal Muscle Trunk	muscle
23	chr19:21658000-21658400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr19:21658000-21658600	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr19:21658000-21658600	Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr19:21658000-21658600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr19:21658000-21659000	Active TSS	H9 Cell Line	embryonic stem cell
28	chr19:21658000-21665600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:21658000-21665800	Weak transcription	Gastric	stomach
30	chr19:21658000-21665800	Weak transcription	Lung	lung
31	chr19:21658200-21658400	Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr19:21658200-21658400	Enhancers	Primary B cells from cord blood	blood
33	chr19:21658200-21658400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr19:21658200-21658400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr19:21658200-21658600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr19:21658200-21658800	Weak transcription	Spleen	Spleen
37	chr19:21658200-21665800	Weak transcription	Right Ventricle	heart
38	chr19:21658200-21667400	Weak transcription	Right Atrium	heart
39	chr19:21658200-21687800	Weak transcription	Brain Substantia Nigra	brain

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