Variant report

Variant	rs58263493
Chromosome Location	chr22:33394322-33394323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33385978..33389779-chr22:33390514..33394605,9	MCF-7	breast:
2	chr22:33196518..33199215-chr22:33391329..33394427,4	MCF-7	breast:
3	22:32920308-32927723..22:33389304-33403028	K562	blood:
4	chr22:33196410..33199341-chr22:33390721..33395867,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2195084	1.00[EUR][1000 genomes]
rs55790278	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56220612	1.00[EUR][1000 genomes]
rs56372607	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58050936	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59751131	1.00[EUR][1000 genomes]
rs73881920	1.00[EUR][1000 genomes]
rs73881927	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881928	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881929	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881933	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881934	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881935	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33382400-33404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr22:33383800-33395800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr22:33384000-33396200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr22:33384800-33394600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr22:33386200-33397000	Enhancers	Placenta	Placenta
6	chr22:33388200-33396600	Weak transcription	Brain Substantia Nigra	brain
7	chr22:33388200-33396600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:33388200-33400000	Weak transcription	Brain Angular Gyrus	brain
9	chr22:33388400-33401000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr22:33389600-33396600	Weak transcription	Brain Anterior Caudate	brain
11	chr22:33390800-33396200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:33390800-33399800	Weak transcription	Fetal Brain Female	brain
13	chr22:33391000-33395800	Weak transcription	Brain Germinal Matrix	brain
14	chr22:33391000-33396400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:33391200-33395400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr22:33391200-33395800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr22:33391200-33395800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:33391200-33396400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:33391200-33396400	Weak transcription	Fetal Brain Male	brain
20	chr22:33391400-33395400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr22:33391600-33395000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr22:33391600-33395200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr22:33391600-33396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr22:33391600-33396400	Weak transcription	Fetal Lung	lung
25	chr22:33391600-33399800	Weak transcription	HepG2	liver
26	chr22:33391800-33395800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr22:33391800-33398400	Enhancers	HMEC	breast
28	chr22:33392000-33395200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr22:33392000-33395400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr22:33392200-33395200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr22:33392800-33395600	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr22:33393000-33395800	Weak transcription	Brain Hippocampus Middle	brain
33	chr22:33393000-33396400	Weak transcription	Fetal Heart	heart
34	chr22:33393000-33398400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr22:33393200-33394400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr22:33393200-33395400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr22:33393200-33395600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr22:33393200-33395800	Weak transcription	Fetal Stomach	stomach
39	chr22:33393400-33396400	Weak transcription	Lung	lung
40	chr22:33393400-33396600	Weak transcription	Adipose Nuclei	Adipose
41	chr22:33393400-33399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr22:33393600-33395000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr22:33393600-33395000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr22:33393600-33395000	Weak transcription	Hela-S3	cervix
45	chr22:33393600-33395000	Weak transcription	NHEK	skin
46	chr22:33393600-33395600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links