Variant report

Variant	rs73881927
Chromosome Location	chr22:33389902-33389903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32952823..32954629-chr22:33388460..33390492,2	MCF-7	breast:
2	22:32920308-32927723..22:33389304-33403028	K562	blood:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2195084	1.00[EUR][1000 genomes]
rs55790278	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56220612	1.00[EUR][1000 genomes]
rs56372607	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58050936	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58263493	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59751131	1.00[EUR][1000 genomes]
rs73881920	1.00[EUR][1000 genomes]
rs73881928	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881929	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881933	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881934	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881935	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881957	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33382000-33390200	Weak transcription	Right Atrium	heart
2	chr22:33382400-33392400	Weak transcription	Lung	lung
3	chr22:33382400-33404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr22:33382600-33390400	Weak transcription	Right Ventricle	heart
5	chr22:33383600-33393200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:33383800-33390000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:33383800-33390400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr22:33383800-33392200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr22:33383800-33395800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr22:33384000-33396200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr22:33384400-33390800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:33384800-33394600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr22:33385200-33390600	Weak transcription	Spleen	Spleen
14	chr22:33385400-33390000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr22:33386200-33397000	Enhancers	Placenta	Placenta
16	chr22:33386600-33393600	Enhancers	Fetal Muscle Leg	muscle
17	chr22:33387400-33391200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr22:33387400-33391600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr22:33387400-33391600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr22:33387400-33391600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr22:33387600-33391600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr22:33387600-33391600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr22:33387800-33390000	Weak transcription	Fetal Brain Female	brain
24	chr22:33387800-33391400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr22:33388000-33392800	Weak transcription	Brain Hippocampus Middle	brain
26	chr22:33388200-33396600	Weak transcription	Brain Substantia Nigra	brain
27	chr22:33388200-33396600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr22:33388200-33400000	Weak transcription	Brain Angular Gyrus	brain
29	chr22:33388400-33390400	Weak transcription	Adipose Nuclei	Adipose
30	chr22:33388400-33390400	Weak transcription	Esophagus	oesophagus
31	chr22:33388400-33401000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr22:33388600-33390000	Weak transcription	Fetal Brain Male	brain
33	chr22:33388800-33390600	Weak transcription	Left Ventricle	heart
34	chr22:33389000-33390400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr22:33389000-33390400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr22:33389200-33390400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr22:33389200-33390400	Weak transcription	HMEC	breast
38	chr22:33389200-33390400	Weak transcription	NHEK	skin
39	chr22:33389200-33391200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr22:33389200-33391800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr22:33389200-33392000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr22:33389600-33391000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr22:33389600-33391600	Enhancers	Fetal Stomach	stomach
44	chr22:33389600-33396600	Weak transcription	Brain Anterior Caudate	brain
45	chr22:33389800-33390200	Bivalent Enhancer	Fetal Intestine Small	intestine
46	chr22:33389800-33391000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr22:33389800-33391000	Enhancers	Brain Germinal Matrix	brain
48	chr22:33389800-33391400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr22:33389800-33391600	Enhancers	Fetal Lung	lung
50	chr22:33389800-33391600	Enhancers	Fetal Muscle Trunk	muscle

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