Variant report

Variant	rs58265751
Chromosome Location	chr5:124377841-124377842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124373569..124376371-chr5:124376521..124378624,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10040754	0.84[ASN][1000 genomes]
rs4555796	0.82[ASN][1000 genomes]
rs4836144	0.82[ASN][1000 genomes]
rs58908150	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
2	chr5:124371600-124379600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:124374400-124379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124375000-124379600	Weak transcription	Fetal Thymus	thymus
5	chr5:124376400-124378800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:124376600-124378000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:124376600-124378400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:124376600-124378800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:124376600-124379000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:124376600-124382800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:124376800-124378000	Enhancers	Dnd41	blood
12	chr5:124376800-124378600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:124377200-124378200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:124377200-124378600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:124377200-124379000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:124377200-124380600	Enhancers	Adipose Nuclei	Adipose
17	chr5:124377200-124380600	Enhancers	Fetal Lung	lung
18	chr5:124377400-124378000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr5:124377400-124378000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:124377400-124378200	Enhancers	Stomach Mucosa	stomach
21	chr5:124377400-124378600	Enhancers	Fetal Heart	heart
22	chr5:124377400-124379000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:124377400-124379400	Enhancers	A549	lung
24	chr5:124377400-124380600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr5:124377400-124381000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:124377400-124381200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:124377600-124378000	Weak transcription	Left Ventricle	heart
28	chr5:124377600-124378200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:124377600-124378200	Enhancers	Fetal Muscle Leg	muscle
30	chr5:124377600-124378400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr5:124377600-124378400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:124377600-124378400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:124377600-124378400	Enhancers	Colon Smooth Muscle	Colon
34	chr5:124377600-124378600	Enhancers	Fetal Stomach	stomach
35	chr5:124377600-124378600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr5:124377600-124380000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:124377600-124380000	Enhancers	NH-A	brain
38	chr5:124377600-124380400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:124377600-124380800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr5:124377600-124381200	Enhancers	Fetal Kidney	kidney
41	chr5:124377600-124381800	Enhancers	NHDF-Ad	bronchial
42	chr5:124377800-124378000	Enhancers	Osteobl	bone
43	chr5:124377800-124378200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr5:124377800-124378200	Enhancers	Small Intestine	intestine
45	chr5:124377800-124379400	Weak transcription	Right Atrium	heart
46	chr5:124377800-124379800	Enhancers	HSMMtube	muscle
47	chr5:124377800-124380400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:124377800-124381000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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