Variant report
| Variant | rs4836144 |
|---|---|
| Chromosome Location | chr5:124407704-124407705 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10040754 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11241784 | 0.98[ASN][1000 genomes] |
| rs11955202 | 0.89[ASN][1000 genomes] |
| rs13188506 | 0.88[AMR][1000 genomes] |
| rs28649435 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4075487 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4293913 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4451044 | 0.93[ASN][1000 genomes] |
| rs4510579 | 0.93[ASN][1000 genomes] |
| rs4555796 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55888913 | 0.98[ASN][1000 genomes] |
| rs55919034 | 0.93[ASN][1000 genomes] |
| rs58265751 | 0.82[ASN][1000 genomes] |
| rs58908150 | 0.95[ASN][1000 genomes] |
| rs59612060 | 0.91[ASN][1000 genomes] |
| rs62372843 | 0.95[ASN][1000 genomes] |
| rs6595573 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6866873 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6872841 | 0.98[ASN][1000 genomes] |
| rs72787446 | 0.98[ASN][1000 genomes] |
| rs7444307 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7446011 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7700716 | 0.91[ASN][1000 genomes] |
| rs7711673 | 0.91[ASN][1000 genomes] |
| rs9686683 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882822 | chr5:124250018-124449375 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830474 | chr5:124263628-124431299 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv830475 | chr5:124387292-124550256 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019740 | chr5:124394818-124431220 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv980721 | chr5:124407289-124411161 | ZNF genes & repeats Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:124401000-124424200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr5:124406000-124411800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
