Variant report
Variant | rs9686683 |
---|---|
Chromosome Location | chr5:124404963-124404964 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10040754 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11241784 | 0.96[ASN][1000 genomes] |
rs11955202 | 0.91[ASN][1000 genomes] |
rs13188506 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs28649435 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4075487 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4131047 | 1.00[JPT][hapmap] |
rs4293913 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4415071 | 1.00[JPT][hapmap] |
rs4451044 | 0.91[ASN][1000 genomes] |
rs4510579 | 0.91[ASN][1000 genomes] |
rs4555796 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4836144 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs55888913 | 0.96[ASN][1000 genomes] |
rs55919034 | 0.91[ASN][1000 genomes] |
rs58908150 | 0.93[ASN][1000 genomes] |
rs59612060 | 0.93[ASN][1000 genomes] |
rs62372843 | 0.98[ASN][1000 genomes] |
rs6595573 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6866873 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6872841 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs72787446 | 0.96[ASN][1000 genomes] |
rs7444307 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7446011 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7700716 | 0.93[ASN][1000 genomes] |
rs7711673 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882822 | chr5:124250018-124449375 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv830474 | chr5:124263628-124431299 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv830475 | chr5:124387292-124550256 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1019740 | chr5:124394818-124431220 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:124396400-124405000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr5:124401000-124424200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |