Variant report

Variant	rs58278562
Chromosome Location	chr6:56111219-56111220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60293075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56100200-56111600	Weak transcription	Right Atrium	heart
2	chr6:56103600-56111600	Weak transcription	Left Ventricle	heart
3	chr6:56106000-56111400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:56106200-56111600	Weak transcription	Ovary	ovary
5	chr6:56106400-56111600	Weak transcription	Psoas Muscle	Psoas
6	chr6:56106600-56111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:56106600-56112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:56107000-56111400	Weak transcription	Brain Substantia Nigra	brain
9	chr6:56107400-56111800	Weak transcription	HMEC	breast
10	chr6:56108200-56111600	Weak transcription	A549	lung
11	chr6:56108400-56111400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:56108600-56111400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:56109200-56111400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:56109200-56111400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:56109200-56111600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:56109200-56111800	Weak transcription	Esophagus	oesophagus
17	chr6:56109400-56111600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:56109400-56113000	Active TSS	Aorta	Aorta
19	chr6:56109600-56111400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:56109800-56111600	Enhancers	NHDF-Ad	bronchial
21	chr6:56110200-56111800	Active TSS	Fetal Stomach	stomach
22	chr6:56110400-56111400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:56110400-56111800	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:56110400-56112000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:56110400-56112000	Active TSS	Fetal Muscle Trunk	muscle
26	chr6:56110400-56112000	Enhancers	Stomach Mucosa	stomach
27	chr6:56110400-56112000	Enhancers	HSMMtube	muscle
28	chr6:56110400-56112800	Active TSS	Fetal Kidney	kidney
29	chr6:56110600-56111400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:56110800-56111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:56110800-56111800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:56110800-56112000	Active TSS	Fetal Muscle Leg	muscle
33	chr6:56110800-56112400	Active TSS	Fetal Lung	lung
34	chr6:56111000-56111400	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:56111000-56111600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:56111000-56111600	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr6:56111000-56111800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:56111000-56111800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:56111000-56111800	Active TSS	Brain Hippocampus Middle	brain
40	chr6:56111000-56112000	Enhancers	Liver	Liver
41	chr6:56111000-56112600	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr6:56111200-56111400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:56111200-56111400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr6:56111200-56111400	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr6:56111200-56111400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr6:56111200-56111400	Enhancers	NHLF	lung
47	chr6:56111200-56111600	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr6:56111200-56111600	Enhancers	NHEK	skin
49	chr6:56111200-56112600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr6:56111200-56112600	Active TSS	H1 Cell Line	embryonic stem cell

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