Variant report

Variant	rs58281783
Chromosome Location	chr16:65042992-65042993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11862311	1.00[EUR][1000 genomes]
rs13330323	1.00[EUR][1000 genomes]
rs28438430	1.00[EUR][1000 genomes]
rs7198195	1.00[EUR][1000 genomes]
rs73576233	1.00[EUR][1000 genomes]
rs73576245	1.00[EUR][1000 genomes]
rs73576255	1.00[EUR][1000 genomes]
rs8053035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8056044	1.00[EUR][1000 genomes]
rs8057003	1.00[EUR][1000 genomes]
rs8060058	1.00[EUR][1000 genomes]
rs9930760	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
3	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:65032200-65043400	Weak transcription	Fetal Brain Male	brain
5	chr16:65036000-65051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr16:65036400-65043400	Weak transcription	Brain Substantia Nigra	brain
7	chr16:65036400-65043600	Weak transcription	Brain Hippocampus Middle	brain
8	chr16:65036600-65043600	Weak transcription	Brain Angular Gyrus	brain
9	chr16:65037000-65043800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:65037000-65044000	Strong transcription	Osteobl	bone
11	chr16:65037800-65044400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:65039000-65043600	Weak transcription	Brain Anterior Caudate	brain
13	chr16:65039000-65043800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr16:65039000-65043800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
16	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
17	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr16:65039400-65043600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr16:65039400-65043600	Weak transcription	Fetal Brain Female	brain
20	chr16:65039400-65050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr16:65039600-65043600	Weak transcription	Brain Germinal Matrix	brain
22	chr16:65039600-65045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:65039600-65049000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr16:65040000-65044000	Weak transcription	Spleen	Spleen
27	chr16:65040000-65049800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr16:65040200-65045800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr16:65040400-65043400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr16:65040400-65049800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:65040600-65043800	Weak transcription	Fetal Muscle Leg	muscle
32	chr16:65040600-65045800	Weak transcription	HSMMtube	muscle
33	chr16:65040600-65086000	Weak transcription	HMEC	breast
34	chr16:65040800-65043800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr16:65041000-65045600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr16:65041000-65045800	Weak transcription	Ovary	ovary
37	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
39	chr16:65041400-65045800	Weak transcription	HSMM	muscle
40	chr16:65041400-65045800	Weak transcription	NHLF	lung
41	chr16:65041600-65045800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr16:65041600-65046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:65041600-65047000	Weak transcription	Fetal Stomach	stomach
44	chr16:65041800-65043000	Strong transcription	NH-A	brain
45	chr16:65042000-65043800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr16:65042000-65046200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr16:65042800-65045200	Weak transcription	NHDF-Ad	bronchial

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