Variant report

Variant	rs73576245
Chromosome Location	chr16:65188342-65188343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11862311	1.00[EUR][1000 genomes]
rs13330323	1.00[EUR][1000 genomes]
rs13339464	1.00[EUR][1000 genomes]
rs1895491	1.00[EUR][1000 genomes]
rs28438430	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58281783	1.00[EUR][1000 genomes]
rs7198195	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576233	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576255	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8053035	1.00[EUR][1000 genomes]
rs8056044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8057003	1.00[EUR][1000 genomes]
rs8060058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9930760	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65187200-65188800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:65187400-65188400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr16:65187400-65188400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr16:65187400-65188400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr16:65187400-65188800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr16:65187400-65188800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr16:65187400-65189000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr16:65187800-65188400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr16:65187800-65188400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr16:65187800-65188800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:65187800-65188800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr16:65188000-65188600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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