Variant report

Variant	rs58285195
Chromosome Location	chr19:41622205-41622206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1173262	0.85[ASN][1000 genomes]
rs1709092	0.90[ASN][1000 genomes]
rs1709093	1.00[EUR][1000 genomes]
rs28467471	0.80[AFR][1000 genomes]
rs28568408	0.80[AFR][1000 genomes]
rs28709328	0.80[AFR][1000 genomes]
rs28754754	0.80[AFR][1000 genomes]
rs305984	0.90[ASN][1000 genomes]
rs305985	0.90[ASN][1000 genomes]
rs3901000	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41620600-41627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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