Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41223179..41225407-chr19:41612527..41615194,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123815	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1173262	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1645696	0.85[AFR][1000 genomes]
rs1645709	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs1645710	0.85[YRI][hapmap]
rs1645712	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1709084	0.85[AFR][1000 genomes]
rs1709085	0.85[AFR][1000 genomes]
rs1709092	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709093	0.86[AFR][1000 genomes]
rs1709112	1.00[YRI][hapmap]
rs1709113	0.85[AFR][1000 genomes]
rs1709114	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1709115	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs184247	0.89[AFR][1000 genomes]
rs2458636	0.94[AFR][1000 genomes]
rs2458638	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2548792	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs28447222	0.90[AFR][1000 genomes]
rs305984	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58285195	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: