Variant report

Variant	rs1709085
Chromosome Location	chr19:41602530-41602531
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1173262	0.85[AFR][1000 genomes]
rs1645690	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1645696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1645709	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1645711	1.00[JPT][hapmap]
rs1645712	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709081	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1709082	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1709083	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709092	0.96[AFR][1000 genomes]
rs1709093	0.94[AFR][1000 genomes]
rs1709112	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap]
rs1709114	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709115	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17713907	1.00[CEU][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs184247	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2458636	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2458638	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2548792	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28447222	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs305984	0.95[AFR][1000 genomes]
rs305985	0.85[AFR][1000 genomes]
rs305990	0.83[EUR][1000 genomes]
rs305991	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs305992	0.83[EUR][1000 genomes]
rs305993	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs305995	0.83[EUR][1000 genomes]
rs305996	0.83[EUR][1000 genomes]
rs305997	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs305999	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62117407	0.88[EUR][1000 genomes]
rs62117409	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62117410	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62117438	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62117442	0.93[EUR][1000 genomes]
rs62117443	0.93[EUR][1000 genomes]
rs62117444	0.93[EUR][1000 genomes]
rs62117446	0.93[EUR][1000 genomes]
rs7246981	0.90[EUR][1000 genomes]
rs8192786	0.80[EUR][1000 genomes]
rs9917112	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41601600-41602600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:41602400-41602600	Flanking Active TSS	K562	blood

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