Variant report

Variant	rs8192786
Chromosome Location	chr19:41596587-41596588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1645690	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1645696	0.80[EUR][1000 genomes]
rs1645709	0.85[EUR][1000 genomes]
rs1645712	0.87[EUR][1000 genomes]
rs1709081	0.91[EUR][1000 genomes]
rs1709082	0.89[EUR][1000 genomes]
rs1709084	0.80[EUR][1000 genomes]
rs1709085	0.80[EUR][1000 genomes]
rs1709114	0.87[EUR][1000 genomes]
rs1709115	0.87[EUR][1000 genomes]
rs17713907	0.88[EUR][1000 genomes]
rs184247	0.87[EUR][1000 genomes]
rs2458636	0.87[EUR][1000 genomes]
rs2458638	0.87[EUR][1000 genomes]
rs2548792	0.85[EUR][1000 genomes]
rs28447222	0.87[EUR][1000 genomes]
rs305989	0.82[EUR][1000 genomes]
rs305990	0.88[EUR][1000 genomes]
rs305992	0.88[EUR][1000 genomes]
rs305995	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs305996	0.88[EUR][1000 genomes]
rs62117407	0.88[EUR][1000 genomes]
rs62117409	0.87[EUR][1000 genomes]
rs62117410	0.87[EUR][1000 genomes]
rs62117438	0.87[EUR][1000 genomes]
rs62117442	0.87[EUR][1000 genomes]
rs62117443	0.87[EUR][1000 genomes]
rs62117444	0.87[EUR][1000 genomes]
rs62117446	0.87[EUR][1000 genomes]
rs7246981	0.84[EUR][1000 genomes]
rs8192789	0.82[ASN][1000 genomes]
rs9917112	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv978819	chr19:41589889-41601315	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41595200-41596600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:41595400-41596600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr19:41595400-41596600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr19:41595600-41596800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr19:41595800-41596600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr19:41595800-41596600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:41596200-41596600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr19:41596400-41596600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr19:41596400-41596600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr19:41596400-41596600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr19:41596400-41596800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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