Variant report
| Variant | rs305992 |
|---|---|
| Chromosome Location | chr19:41590207-41590208 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12460311 | 0.89[ASN][1000 genomes] |
| rs12460312 | 0.89[ASN][1000 genomes] |
| rs12608530 | 0.89[ASN][1000 genomes] |
| rs1645690 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1645696 | 0.83[EUR][1000 genomes] |
| rs1709081 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1709082 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1709083 | 0.84[EUR][1000 genomes] |
| rs1709084 | 0.83[EUR][1000 genomes] |
| rs1709085 | 0.83[EUR][1000 genomes] |
| rs305988 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs305989 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs305990 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs305991 | 0.87[EUR][1000 genomes] |
| rs305993 | 0.87[EUR][1000 genomes] |
| rs305995 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs305996 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs305997 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs305999 | 0.87[EUR][1000 genomes] |
| rs61280220 | 0.89[ASN][1000 genomes] |
| rs73563325 | 0.89[ASN][1000 genomes] |
| rs8192786 | 0.88[EUR][1000 genomes] |
| rs8192789 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066637 | chr19:41309211-41597896 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1065684 | chr19:41516389-41644542 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv2491 | chr19:41560948-41604222 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv978819 | chr19:41589889-41601315 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:41586400-41594800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
