Variant report

Variant	rs1709082
Chromosome Location	chr19:41601609-41601610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1645690	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1645694	0.88[AFR][1000 genomes]
rs1645696	0.89[EUR][1000 genomes]
rs1645709	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1645712	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1709081	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709083	0.88[EUR][1000 genomes]
rs1709084	0.89[EUR][1000 genomes]
rs1709085	0.89[EUR][1000 genomes]
rs1709112	1.00[CEU][hapmap]
rs1709114	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1709115	1.00[CEU][hapmap]
rs17713907	1.00[CEU][hapmap]
rs184247	0.82[EUR][1000 genomes]
rs2458636	0.82[EUR][1000 genomes]
rs2458638	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2548792	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28447222	0.82[EUR][1000 genomes]
rs305987	0.81[AMR][1000 genomes]
rs305989	0.84[EUR][1000 genomes]
rs305990	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs305991	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs305992	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs305993	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs305995	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs305996	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs305999	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62117409	0.82[EUR][1000 genomes]
rs62117410	0.82[EUR][1000 genomes]
rs62117438	0.82[EUR][1000 genomes]
rs62117442	0.82[EUR][1000 genomes]
rs62117443	0.82[EUR][1000 genomes]
rs62117444	0.82[EUR][1000 genomes]
rs62117446	0.82[EUR][1000 genomes]
rs8192786	0.89[EUR][1000 genomes]
rs9917112	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41601600-41601800	Flanking Active TSS	K562	blood
2	chr19:41601600-41602200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr19:41601600-41602200	Enhancers	Placenta	Placenta
4	chr19:41601600-41602600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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