Variant report

Variant	rs28447222
Chromosome Location	chr19:41620562-41620563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1173262	0.90[AFR][1000 genomes]
rs1645696	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1645709	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1645711	0.87[ASN][1000 genomes]
rs1645712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709081	0.84[EUR][1000 genomes]
rs1709082	0.82[EUR][1000 genomes]
rs1709083	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709084	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709085	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709113	0.95[AFR][1000 genomes]
rs1709114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713907	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs184247	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458636	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458638	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2548792	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs305984	0.81[AFR][1000 genomes]
rs305985	0.90[AFR][1000 genomes]
rs305991	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs305993	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs305997	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs305999	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62117407	0.95[EUR][1000 genomes]
rs62117409	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117410	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117438	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117442	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117443	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117444	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117446	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7246981	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8192786	0.87[EUR][1000 genomes]
rs9917112	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41618600-41620600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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