Variant report
| Variant | rs62117407 |
|---|---|
| Chromosome Location | chr19:41599058-41599059 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1645696 | 0.88[EUR][1000 genomes] |
| rs1645709 | 0.94[EUR][1000 genomes] |
| rs1645712 | 0.95[EUR][1000 genomes] |
| rs1709083 | 0.84[EUR][1000 genomes] |
| rs1709084 | 0.88[EUR][1000 genomes] |
| rs1709085 | 0.88[EUR][1000 genomes] |
| rs1709114 | 0.95[EUR][1000 genomes] |
| rs1709115 | 0.95[EUR][1000 genomes] |
| rs17713907 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs184247 | 0.95[EUR][1000 genomes] |
| rs2458636 | 0.95[EUR][1000 genomes] |
| rs2458638 | 0.95[EUR][1000 genomes] |
| rs2548792 | 0.94[EUR][1000 genomes] |
| rs28447222 | 0.95[EUR][1000 genomes] |
| rs305991 | 0.90[EUR][1000 genomes] |
| rs305993 | 0.90[EUR][1000 genomes] |
| rs305997 | 0.87[EUR][1000 genomes] |
| rs305999 | 0.90[EUR][1000 genomes] |
| rs62117384 | 1.00[ASN][1000 genomes] |
| rs62117409 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62117410 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62117438 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62117442 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62117443 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62117444 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62117446 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7246981 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8192786 | 0.88[EUR][1000 genomes] |
| rs9917112 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065684 | chr19:41516389-41644542 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv2491 | chr19:41560948-41604222 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv978819 | chr19:41589889-41601315 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:41598800-41601600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
