Variant report

Variant	rs1645709
Chromosome Location	chr19:41614570-41614571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41223179..41225407-chr19:41612527..41615194,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123815	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10513606	1.00[JPT][hapmap]
rs1173262	0.91[AFR][1000 genomes]
rs1645690	1.00[CEU][hapmap]
rs1645696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1645710	0.84[YRI][hapmap]
rs1645711	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1645712	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709081	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1709082	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1709083	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709085	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1709092	0.81[AFR][1000 genomes]
rs1709112	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1709113	0.89[AFR][1000 genomes]
rs1709114	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709115	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713907	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs184247	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458638	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2548792	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28447222	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs305984	0.82[AFR][1000 genomes]
rs305985	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs305991	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs305993	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs305997	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs305999	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3745279	1.00[JPT][hapmap]
rs3826712	1.00[JPT][hapmap]
rs62117407	0.94[EUR][1000 genomes]
rs62117409	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62117410	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62117438	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62117442	0.98[EUR][1000 genomes]
rs62117443	0.98[EUR][1000 genomes]
rs62117444	0.98[EUR][1000 genomes]
rs62117446	0.98[EUR][1000 genomes]
rs7246981	0.95[EUR][1000 genomes]
rs8102724	1.00[JPT][hapmap]
rs8192786	0.85[EUR][1000 genomes]
rs9917112	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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