Variant report
| Variant | rs1645710 |
|---|---|
| Chromosome Location | chr19:41617293-41617294 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr19:41617288-41617409 | MCF-7 | breast: | n/a | n/a |
| 2 | CTCF | chr19:41617260-41617421 | MCF-7 | breast: | n/a | n/a |
| 3 | CTCF | chr19:41617277-41617399 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | CTCF | chr19:41617247-41617400 | MCF-7 | breast: | n/a | n/a |
| 5 | CTCF | chr19:41617255-41617383 | MCF-7 | breast: | n/a | n/a |
| 6 | CTCF | chr19:41617257-41617362 | K562 | blood: | n/a | n/a |
| 7 | CTCF | chr19:41617286-41617320 | Hela-S3 | cervix: | n/a | n/a |
| 8 | CTCF | chr19:41617270-41617351 | HepG2 | liver: | n/a | n/a |
| 9 | CTCF | chr19:41617280-41617430 | SK-N-SH_RA | brain: | n/a | n/a |
| 10 | CTCF | chr19:41617240-41617390 | HEK293 | kidney: | n/a | n/a |
| 11 | CTCF | chr19:41617254-41617412 | MCF-7 | breast: | n/a | n/a |
| 12 | RAD21 | chr19:41617182-41617478 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 13 | CTCF | chr19:41617280-41617430 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CYP2F1 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10411962 | 1.00[MEX][hapmap] |
| rs11670500 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1645691 | 1.00[ASN][1000 genomes] |
| rs1645693 | 1.00[JPT][hapmap] |
| rs1645708 | 1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1645709 | 0.84[YRI][hapmap] |
| rs1645711 | 1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1645712 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs1709112 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs1709113 | 1.00[ASN][1000 genomes] |
| rs1709114 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs1709115 | 0.82[ASW][hapmap];0.85[YRI][hapmap] |
| rs2458638 | 0.84[YRI][hapmap] |
| rs2548792 | 0.80[YRI][hapmap] |
| rs305985 | 0.85[YRI][hapmap] |
| rs305991 | 1.00[JPT][hapmap] |
| rs7250597 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065684 | chr19:41516389-41644542 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
