Variant report

Variant	rs1709113
Chromosome Location	chr19:41620120-41620121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11670500	1.00[ASN][1000 genomes]
rs1173262	0.85[AFR][1000 genomes]
rs1645691	1.00[ASN][1000 genomes]
rs1645708	1.00[ASN][1000 genomes]
rs1645709	0.89[AFR][1000 genomes]
rs1645710	1.00[ASN][1000 genomes]
rs1645712	0.95[AFR][1000 genomes]
rs1709114	0.95[AFR][1000 genomes]
rs1709115	0.95[AFR][1000 genomes]
rs184247	0.93[AFR][1000 genomes]
rs2458636	0.91[AFR][1000 genomes]
rs2458638	0.91[AFR][1000 genomes]
rs2548792	0.91[AFR][1000 genomes]
rs28447222	0.95[AFR][1000 genomes]
rs305985	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41618600-41620600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:41618800-41620200	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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