Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr19:41620174-41620511	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41254906..41257408-chr19:41618440..41620283,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1645708	0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs1645709	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1645710	1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1645712	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1709112	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1709114	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1709115	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs184247	0.87[ASN][1000 genomes]
rs2458636	0.87[ASN][1000 genomes]
rs2458638	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2548792	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28447222	0.87[ASN][1000 genomes]
rs28568408	0.86[ASN][1000 genomes]
rs28754754	0.86[ASN][1000 genomes]
rs305994	0.83[AMR][1000 genomes]
rs3745279	0.86[ASN][1000 genomes]
rs3745281	0.86[ASN][1000 genomes]
rs3826712	0.86[ASN][1000 genomes]
rs58426857	0.86[ASN][1000 genomes]
rs59722942	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41618600-41620600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:41618800-41620200	Enhancers	Esophagus	oesophagus

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