Variant report

Variant	rs59722942
Chromosome Location	chr19:41596346-41596347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1645711	0.86[ASN][1000 genomes]
rs17713907	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28568408	1.00[ASN][1000 genomes]
rs28754754	1.00[ASN][1000 genomes]
rs3745279	1.00[ASN][1000 genomes]
rs3745281	1.00[ASN][1000 genomes]
rs3826712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58426857	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv978819	chr19:41589889-41601315	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41595200-41596600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:41595400-41596400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr19:41595400-41596400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr19:41595400-41596400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr19:41595400-41596400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
6	chr19:41595400-41596600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr19:41595400-41596600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr19:41595600-41596400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:41595600-41596400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:41595600-41596800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr19:41595800-41596400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr19:41595800-41596400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:41595800-41596600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr19:41595800-41596600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:41596000-41596400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr19:41596000-41596400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:41596200-41596600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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