Variant report

Variant	rs17713907
Chromosome Location	chr19:41599323-41599324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10513606	1.00[JPT][hapmap]
rs1645690	1.00[CEU][hapmap]
rs1645696	0.88[EUR][1000 genomes]
rs1645709	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1645712	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1709081	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1709082	1.00[CEU][hapmap]
rs1709083	0.84[EUR][1000 genomes]
rs1709084	0.88[EUR][1000 genomes]
rs1709085	0.88[EUR][1000 genomes]
rs1709112	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap]
rs1709114	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1709115	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs184247	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2458636	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2458638	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2548792	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28447222	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28568408	0.86[ASN][1000 genomes]
rs28754754	0.86[ASN][1000 genomes]
rs305991	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs305993	0.90[EUR][1000 genomes]
rs305997	0.87[EUR][1000 genomes]
rs305999	0.90[EUR][1000 genomes]
rs3745279	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3745281	0.86[ASN][1000 genomes]
rs3826712	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs58426857	0.86[ASN][1000 genomes]
rs59722942	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62117407	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117409	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62117410	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62117438	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62117442	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62117443	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62117444	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62117446	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7246981	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192786	0.88[EUR][1000 genomes]
rs9917112	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv978819	chr19:41589889-41601315	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41598800-41601600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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