Variant report

Variant	rs62117443
Chromosome Location	chr19:41618774-41618775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41254906..41257408-chr19:41618440..41620283,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077312	Chromatin interaction
ENSG00000188493	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1645696	0.93[EUR][1000 genomes]
rs1645709	0.98[EUR][1000 genomes]
rs1645712	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1709081	0.84[EUR][1000 genomes]
rs1709082	0.82[EUR][1000 genomes]
rs1709083	0.88[EUR][1000 genomes]
rs1709084	0.93[EUR][1000 genomes]
rs1709085	0.93[EUR][1000 genomes]
rs1709114	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1709115	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17713907	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs184247	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2458636	1.00[EUR][1000 genomes]
rs2458638	1.00[EUR][1000 genomes]
rs2548792	0.98[EUR][1000 genomes]
rs28447222	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs305991	0.85[EUR][1000 genomes]
rs305993	0.85[EUR][1000 genomes]
rs305997	0.83[EUR][1000 genomes]
rs305999	0.85[EUR][1000 genomes]
rs62117384	1.00[ASN][1000 genomes]
rs62117407	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62117409	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62117410	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62117438	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62117442	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62117444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62117446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7246981	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192786	0.87[EUR][1000 genomes]
rs9917112	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41618600-41620600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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