Variant report
| Variant | rs8192789 |
|---|---|
| Chromosome Location | chr19:41597751-41597752 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11879517 | 1.00[EUR][1000 genomes] |
| rs11879521 | 1.00[EUR][1000 genomes] |
| rs12460311 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12460312 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12460939 | 1.00[EUR][1000 genomes] |
| rs12608530 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs305990 | 0.83[ASN][1000 genomes] |
| rs305992 | 0.83[ASN][1000 genomes] |
| rs305996 | 0.83[ASN][1000 genomes] |
| rs3745284 | 1.00[EUR][1000 genomes] |
| rs58894601 | 1.00[EUR][1000 genomes] |
| rs59191000 | 1.00[EUR][1000 genomes] |
| rs59797778 | 1.00[EUR][1000 genomes] |
| rs59812390 | 1.00[EUR][1000 genomes] |
| rs61280220 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73545059 | 1.00[EUR][1000 genomes] |
| rs73545060 | 1.00[EUR][1000 genomes] |
| rs73545063 | 1.00[EUR][1000 genomes] |
| rs73545069 | 1.00[EUR][1000 genomes] |
| rs73545072 | 1.00[EUR][1000 genomes] |
| rs73563325 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8192784 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8192786 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066637 | chr19:41309211-41597896 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1065684 | chr19:41516389-41644542 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv2491 | chr19:41560948-41604222 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv978819 | chr19:41589889-41601315 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:41597600-41598000 | Bivalent Enhancer | iPS DF 19.11 Cell Line | embryonic stem cell |
