Variant report

Variant	rs12460939
Chromosome Location	chr19:41630208-41630209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr19:41630011-41630293	HepG2	liver:	n/a	chr19:41630151-41630160
2	ZNF384	chr19:41630027-41630264	K562	blood:	n/a	n/a
3	GABPA	chr19:41630130-41630237	HepG2	liver:	n/a	n/a
4	GABPA	chr19:41630127-41630235	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
CYP2F1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11879517	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11879521	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12460311	0.87[EUR][1000 genomes]
rs12460312	0.87[EUR][1000 genomes]
rs12461035	0.85[ASN][1000 genomes]
rs12462215	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12608530	0.87[EUR][1000 genomes]
rs3745284	1.00[EUR][1000 genomes]
rs58894601	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59191000	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59797778	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59812390	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61280220	0.87[EUR][1000 genomes]
rs73545055	0.82[ASN][1000 genomes]
rs73545059	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73545060	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73545063	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73545069	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73545072	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73563325	0.87[EUR][1000 genomes]
rs8192789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41627200-41630400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:41627200-41633800	Weak transcription	Esophagus	oesophagus
3	chr19:41627200-41634000	Weak transcription	Pancreas	Pancrea
4	chr19:41627400-41632800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr19:41627400-41632800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr19:41627400-41641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:41627600-41632800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr19:41627600-41632800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr19:41627600-41632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr19:41627600-41633000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr19:41628000-41632800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr19:41628000-41632800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr19:41628000-41632800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr19:41628000-41633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:41628200-41633800	Weak transcription	Gastric	stomach
16	chr19:41628600-41630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:41628800-41632400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr19:41629000-41632800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr19:41630000-41630400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:41630200-41632400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr19:41630200-41634000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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