Variant report

Variant	rs73545055
Chromosome Location	chr19:41626923-41626924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:41626921-41627067	MCF-7	breast:	n/a	n/a
2	POLR2A	chr19:41626865-41627013	K562	blood:	n/a	n/a
3	POLR2A	chr19:41626874-41626925	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41621979..41624352-chr19:41625905..41628342,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP2A7P1-2	chr19:41626672-41627570	NONHSAT066433

Variant related genes	Relation type
CYP2F1	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11879517	0.86[ASN][1000 genomes]
rs11879521	0.86[ASN][1000 genomes]
rs12460939	0.82[ASN][1000 genomes]
rs12461035	0.89[ASN][1000 genomes]
rs12462215	0.89[ASN][1000 genomes]
rs58894601	0.93[ASN][1000 genomes]
rs59797778	0.86[ASN][1000 genomes]
rs59812390	0.86[ASN][1000 genomes]
rs73545059	0.93[ASN][1000 genomes]
rs73545060	0.86[ASN][1000 genomes]
rs73545063	0.86[ASN][1000 genomes]
rs73545069	0.86[ASN][1000 genomes]
rs73545072	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3374785	chr19:41624912-41629210	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv15484	chr19:41626703-41628623	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41620600-41627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:41622600-41627000	Weak transcription	Pancreas	Pancrea
3	chr19:41624800-41628000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr19:41625600-41629200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:41625800-41627000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr19:41625800-41627400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr19:41625800-41627400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr19:41625800-41627600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:41625800-41627600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr19:41626000-41627000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr19:41626000-41627400	Enhancers	Primary T cells from cord blood	blood
12	chr19:41626000-41627400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr19:41626000-41627400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr19:41626200-41627600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr19:41626400-41627200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr19:41626400-41627600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr19:41626400-41627600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr19:41626600-41627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:41626600-41627600	Enhancers	Primary B cells from peripheral blood	blood
20	chr19:41626800-41627600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:41626800-41628000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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