Variant report

Variant	rs12461035
Chromosome Location	chr19:41623441-41623442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11879517	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11879521	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12460939	0.85[ASN][1000 genomes]
rs12462215	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3745284	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58894601	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59191000	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59797778	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59812390	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73545055	0.89[ASN][1000 genomes]
rs73545059	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73545060	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73545063	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73545069	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73545072	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41620600-41627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:41622600-41627000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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