Variant report

Variant	rs73545060
Chromosome Location	chr19:41630589-41630590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr19:41630498-41630696	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:41630546-41630596	Jurkat	blood:	n/a
2	chr19:41630546-41630596	NHDF-neo	bronchial:	n/a
3	chr19:41630546-41630596	HUVEC	blood vessel:	n/a
4	chr19:41630546-41630596	ovcar-3	ovarian:	n/a
5	chr19:41630546-41630596	HCM	heart:	n/a
6	chr19:41630546-41630596	AoSMC	blood vessel:	n/a
7	chr19:41630546-41630596	GM12878	blood:	n/a
8	chr19:41630546-41630596	MCF10A-Er-Src	breast:	n/a
9	chr19:41630546-41630596	GM12891	blood:	n/a
10	chr19:41630546-41630596	HRE	kidney:	n/a
11	chr19:41630546-41630596	SK-N-SH_RA	brain:	n/a
12	chr19:41630546-41630596	HAEpiC	amniotic membrane:	n/a
13	chr19:41630546-41630596	NHBE	bronchial:	n/a
14	chr19:41630546-41630596	HCT-116	colon:	n/a
15	chr19:41630546-41630596	GM06990	blood:	n/a
16	chr19:41630546-41630596	LNCaP	prostate:	n/a
17	chr19:41630546-41630596	GM19239	blood:	n/a
18	chr19:41630546-41630596	CMK	blood:	n/a
19	chr19:41630546-41630596	HCPEpiC	choroid plexus:	n/a
20	chr19:41630546-41630596	ECC-1	luminal epithelium:	n/a
21	chr19:41630546-41630596	T-47D	breast:	n/a
22	chr19:41630546-41630596	AG10803	skin:	n/a
23	chr19:41630546-41630596	NB4	blood:	n/a
24	chr19:41630546-41630596	SKMC	muscle:	n/a
25	chr19:41630546-41630596	HRPEpiC	eye:	n/a
26	chr19:41630546-41630596	A549	lung:	n/a
27	chr19:41630546-41630596	Caco-2	colon:	n/a
28	chr19:41630546-41630596	BJ	skin:	n/a
29	chr19:41630546-41630596	ProgFib	skin:	n/a
30	chr19:41630546-41630596	BE2_C	brain:	n/a
31	chr19:41630546-41630596	SK-N-MC	brain:	n/a
32	chr19:41630546-41630596	H1-hESC	embryonic stem cell:	embryo
33	chr19:41630546-41630596	PrEC	prostate:	n/a
34	chr19:41630546-41630596	HPAEpiC	pulmonary alveolar:	n/a
35	chr19:41630546-41630596	PANC-1	pancreas:	n/a
36	chr19:41630546-41630596	HMEC	breast:	n/a
37	chr19:41630546-41630596	GM12892	blood:	n/a
38	chr19:41630546-41630596	PFSK-1	brain:	n/a
39	chr19:41630546-41630596	HEEpiC	esophagus:	n/a
40	chr19:41630546-41630596	AG04449	skin:	fetal
41	chr19:41630546-41630596	SAEC	small airway:	n/a
42	chr19:41630546-41630596	RPTEC	kidney:	n/a
43	chr19:41630546-41630596	Hepatocyte	liver:	n/a
44	chr19:41630546-41630596	AG09319	gingival:	n/a
45	chr19:41630546-41630596	HRCEpiC	kidney:	n/a
46	chr19:41630546-41630596	AG04450	lung:	fetal
47	chr19:41630546-41630596	K562	blood:	n/a
48	chr19:41630546-41630596	HCF	heart:	n/a
49	chr19:41630546-41630596	HNPCEpiC	eye:	n/a
50	chr19:41630546-41630596	U87	brain:	n/a

No data

Variant related genes	Relation type
CYP2F1	TF binding region
CYP2F1	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11879517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11879521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12460311	0.87[EUR][1000 genomes]
rs12460312	0.87[EUR][1000 genomes]
rs12460939	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12461035	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12462215	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12608530	0.87[EUR][1000 genomes]
rs3745284	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58894601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59191000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59797778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59812390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61280220	0.87[EUR][1000 genomes]
rs73545055	0.86[ASN][1000 genomes]
rs73545059	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73545063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73563325	0.87[EUR][1000 genomes]
rs8192789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41627200-41633800	Weak transcription	Esophagus	oesophagus
2	chr19:41627200-41634000	Weak transcription	Pancreas	Pancrea
3	chr19:41627400-41632800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr19:41627400-41632800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr19:41627400-41641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:41627600-41632800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr19:41627600-41632800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr19:41627600-41632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr19:41627600-41633000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr19:41628000-41632800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:41628000-41632800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr19:41628000-41632800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr19:41628000-41633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:41628200-41633800	Weak transcription	Gastric	stomach
15	chr19:41628800-41632400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr19:41629000-41632800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr19:41630200-41632400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:41630200-41634000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr19:41630400-41630800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr19:41630400-41630800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:41630400-41631000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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