Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11879517	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879521	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12460311	0.87[EUR][1000 genomes]
rs12460312	0.87[EUR][1000 genomes]
rs12460939	1.00[EUR][1000 genomes]
rs12461035	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12462215	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12608530	0.87[EUR][1000 genomes]
rs1645694	0.89[ASN][1000 genomes]
rs58894601	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59191000	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59797778	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59812390	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61280220	0.87[EUR][1000 genomes]
rs73545059	1.00[EUR][1000 genomes]
rs73545060	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545063	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545069	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545072	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73563325	0.87[EUR][1000 genomes]
rs8192789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41601600-41602200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr19:41601600-41602200	Enhancers	Placenta	Placenta
3	chr19:41601600-41602600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:41601800-41602000	Enhancers	K562	blood

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