Variant report

Variant	rs58894601
Chromosome Location	chr19:41629015-41629016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11879517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11879521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12460311	0.87[EUR][1000 genomes]
rs12460312	0.87[EUR][1000 genomes]
rs12460939	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12461035	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12462215	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12608530	0.87[EUR][1000 genomes]
rs3745284	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59191000	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59797778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59812390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61280220	0.87[EUR][1000 genomes]
rs73545055	0.93[ASN][1000 genomes]
rs73545059	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73545063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73545069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73545072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73563325	0.87[EUR][1000 genomes]
rs8192789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3374785	chr19:41624912-41629210	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41625600-41629200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr19:41627200-41630400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:41627200-41633800	Weak transcription	Esophagus	oesophagus
4	chr19:41627200-41634000	Weak transcription	Pancreas	Pancrea
5	chr19:41627400-41632800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr19:41627400-41632800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:41627400-41641600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr19:41627600-41629800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr19:41627600-41632800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:41627600-41632800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr19:41627600-41632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr19:41627600-41633000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr19:41628000-41632800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:41628000-41632800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr19:41628000-41632800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr19:41628000-41633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:41628200-41633800	Weak transcription	Gastric	stomach
18	chr19:41628600-41630000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr19:41628600-41630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:41628800-41632400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr19:41629000-41632800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links