Variant report

Variant	rs58292647
Chromosome Location	chr5:95212317-95212318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95211012..95214579-chr5:95216579..95219270,4	K562	blood:
2	chr5:95212190..95213733-chr5:95220441..95223038,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs28926199	1.00[AMR][1000 genomes]
rs4330485	1.00[AMR][1000 genomes]
rs55652330	1.00[AMR][1000 genomes]
rs55757346	1.00[AMR][1000 genomes]
rs57217517	1.00[AMR][1000 genomes]
rs57808386	1.00[AMR][1000 genomes]
rs59433710	1.00[AMR][1000 genomes]
rs60897703	1.00[AMR][1000 genomes]
rs61572029	1.00[AMR][1000 genomes]
rs6870381	1.00[AMR][1000 genomes]
rs73771803	1.00[AMR][1000 genomes]
rs73771806	1.00[AMR][1000 genomes]
rs73771809	1.00[AMR][1000 genomes]
rs73771826	1.00[AMR][1000 genomes]
rs73771828	1.00[AMR][1000 genomes]
rs73771831	1.00[AMR][1000 genomes]
rs73771837	1.00[AMR][1000 genomes]
rs73771838	1.00[AMR][1000 genomes]
rs73771843	1.00[AMR][1000 genomes]
rs73773854	1.00[AMR][1000 genomes]
rs73773855	1.00[AMR][1000 genomes]
rs73780154	1.00[AMR][1000 genomes]
rs7705187	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1019566	chr5:95180352-95300677	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95195200-95217400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:95202000-95212600	Weak transcription	Gastric	stomach
3	chr5:95202800-95217200	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:95206600-95214200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95206600-95218800	Weak transcription	HSMM	muscle
6	chr5:95206800-95214000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95206800-95217400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:95207000-95213800	Weak transcription	Fetal Intestine Small	intestine
9	chr5:95207200-95213800	Weak transcription	GM12878-XiMat	blood
10	chr5:95207400-95218000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:95207400-95219000	Weak transcription	Psoas Muscle	Psoas
12	chr5:95208600-95214400	Weak transcription	Right Atrium	heart
13	chr5:95208800-95214000	Weak transcription	K562	blood
14	chr5:95208800-95217600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:95209600-95212400	Weak transcription	Stomach Mucosa	stomach
16	chr5:95209600-95214000	Weak transcription	Fetal Intestine Large	intestine
17	chr5:95210200-95220000	Weak transcription	Right Ventricle	heart
18	chr5:95210600-95221800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr5:95210800-95214200	Weak transcription	Fetal Heart	heart
20	chr5:95211000-95218400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:95211600-95214000	Enhancers	HepG2	liver
22	chr5:95212000-95214400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:95212000-95216800	Enhancers	Liver	Liver
24	chr5:95212000-95224000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr5:95212200-95212800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:95212200-95213000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:95212200-95213600	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links