Variant report

Variant	rs61572029
Chromosome Location	chr5:95332689-95332690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95330891..95333849-chr5:95334417..95336264,2	K562	blood:
2	chr5:95328505..95331232-chr5:95332077..95333739,2	K562	blood:
3	chr5:95331250..95333197-chr5:95339157..95340673,2	K562	blood:
4	chr5:95327677..95330005-chr5:95332077..95333718,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs28926199	1.00[AMR][1000 genomes]
rs4330485	1.00[AMR][1000 genomes]
rs55652330	1.00[AMR][1000 genomes]
rs55757346	1.00[AMR][1000 genomes]
rs57217517	1.00[AMR][1000 genomes]
rs57808386	1.00[AMR][1000 genomes]
rs58292647	1.00[AMR][1000 genomes]
rs59433710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60897703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870381	1.00[AMR][1000 genomes]
rs73136516	1.00[AMR][1000 genomes]
rs73771803	1.00[AMR][1000 genomes]
rs73771806	1.00[AMR][1000 genomes]
rs73771809	1.00[AMR][1000 genomes]
rs73771826	1.00[AMR][1000 genomes]
rs73771828	1.00[AMR][1000 genomes]
rs73771831	1.00[AMR][1000 genomes]
rs73771837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771843	1.00[AMR][1000 genomes]
rs73773854	1.00[AMR][1000 genomes]
rs73773855	1.00[AMR][1000 genomes]
rs7705187	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv823146	chr5:95300912-95453557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	esv34203	chr5:95310985-95452324	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95323200-95333000	Weak transcription	Stomach Mucosa	stomach
2	chr5:95325600-95336200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:95329400-95332800	Weak transcription	K562	blood
4	chr5:95329600-95333200	Weak transcription	Fetal Intestine Small	intestine
5	chr5:95329600-95333400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:95330400-95338400	Enhancers	HepG2	liver
7	chr5:95330600-95333600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:95331000-95340600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:95332000-95332800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:95332000-95333400	Weak transcription	Gastric	stomach
11	chr5:95332200-95336800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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